UTP6

Protein-coding gene in the species Homo sapiens
UTP6
Identifiers
AliasesUTP6, C17orf40, HCA66, small subunit processome component, UTP6 small subunit processome component
External IDsMGI: 2445193; HomoloGene: 41265; GeneCards: UTP6; OMA:UTP6 - orthologs
Gene location (Human)
Chromosome 17 (human)
Chr.Chromosome 17 (human)[1]
Chromosome 17 (human)
Genomic location for UTP6
Genomic location for UTP6
Band17q11.2Start31,860,904 bp[1]
End31,901,708 bp[1]
Gene location (Mouse)
Chromosome 11 (mouse)
Chr.Chromosome 11 (mouse)[2]
Chromosome 11 (mouse)
Genomic location for UTP6
Genomic location for UTP6
Band11 B5|11 47.29 cMStart79,823,147 bp[2]
End79,853,216 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • Achilles tendon

  • cerebellar hemisphere

  • ventricular zone

  • granulocyte

  • monocyte

  • right hemisphere of cerebellum

  • ganglionic eminence

  • anterior pituitary

  • tibial nerve

  • right testis
Top expressed in
  • epiblast

  • otic placode

  • otic vesicle

  • ventricular zone

  • abdominal wall

  • mandibular prominence

  • maxillary prominence

  • Epithelium of choroid plexus

  • neural layer of retina

  • primitive streak
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
  • snoRNA binding
Cellular component
  • small-subunit processome
  • Pwp2p-containing subcomplex of 90S preribosome
  • nucleolus
  • nucleus
  • nucleoplasm
Biological process
  • RNA processing
  • maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • rRNA processing
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

55813

216987

Ensembl

ENSG00000108651

ENSMUSG00000035575

UniProt

Q9NYH9

Q8VCY6

RefSeq (mRNA)

NM_018428

NM_144826

RefSeq (protein)

NP_060898

NP_659075

Location (UCSC)Chr 17: 31.86 – 31.9 MbChr 11: 79.82 – 79.85 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

U3 small nucleolar RNA-associated protein 6 homolog is a protein that in humans is encoded by the UTP6 gene.[5][6][7]

See also

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000108651 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000035575 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Jenne DE, Tinschert S, Stegmann E, Reimann H, Nurnberg P, Horn D, Naumann I, Buske A, Thiel G (Jul 2000). "A common set of at least 11 functional genes is lost in the majority of NF1 patients with gross deletions". Genomics. 66 (1): 93–7. doi:10.1006/geno.2000.6179. PMID 10843809.
  6. ^ Venturin M, Bentivegna A, Moroni R, Larizza L, Riva P (Sep 2005). "Evidence by expression analysis of candidate genes for congenital heart defects in the NF1 microdeletion interval". Ann Hum Genet. 69 (Pt 5): 508–16. doi:10.1111/j.1529-8817.2005.00203.x. PMID 16138909. S2CID 45891228.
  7. ^ "Entrez Gene: UTP6 UTP6, small subunit (SSU) processome component, homolog (yeast)".

Further reading

  • Maruyama K, Sugano S (1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1–2): 171–4. doi:10.1016/0378-1119(94)90802-8. PMID 8125298.
  • Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, et al. (1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1–2): 149–56. doi:10.1016/S0378-1119(97)00411-3. PMID 9373149.
  • Wang Y, Han KJ, Pang XW, et al. (2002). "Large scale identification of human hepatocellular carcinoma-associated antigens by autoantibodies". J. Immunol. 169 (2): 1102–9. doi:10.4049/jimmunol.169.2.1102. PMID 12097419.
  • Scherl A, Couté Y, Déon C, et al. (2003). "Functional proteomic analysis of human nucleolus". Mol. Biol. Cell. 13 (11): 4100–9. doi:10.1091/mbc.E02-05-0271. PMC 133617. PMID 12429849.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
  • Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
  • Andersen JS, Lam YW, Leung AK, et al. (2005). "Nucleolar proteome dynamics". Nature. 433 (7021): 77–83. Bibcode:2005Natur.433...77A. doi:10.1038/nature03207. PMID 15635413. S2CID 4344740.
  • Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID 16189514. S2CID 4427026.
  • Piddubnyak V, Rigou P, Michel L, et al. (2007). "Positive regulation of apoptosis by HCA66, a new Apaf-1 interacting protein, and its putative role in the physiopathology of NF1 microdeletion syndrome patients". Cell Death Differ. 14 (6): 1222–33. doi:10.1038/sj.cdd.4402122. PMID 17380155.
  • Douglas J, Cilliers D, Coleman K, et al. (2007). "Mutations in RNF135, a gene within the NF1 microdeletion region, cause phenotypic abnormalities including overgrowth". Nat. Genet. 39 (8): 963–5. doi:10.1038/ng2083. PMID 17632510. S2CID 35797973.


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